Application to pathogen infection experiments | Like in the simulation study, p0 was initialized by drawing randomly from a uniform distribution . |
NEMix inference | algorithm, p0 is initialized With a random draW from the uniform distribution and for 9 we use a uniform initial configuration. |
Simulation study | The NEMix parameter p0 was initialized by drawing from a uniform distribution in each EM restart. |
The NEM framework | In the absence of further knowledge, the prior is usually set to the uniform distribution . |
Parameter estimation | The estimation was performed for 100 uniformly distributed initial values (in the range of the parameter boundaries) for the parameters which enabled us to derive the parameter correlations (S4 Fig). |
Results | In Model-1, mCLB is uniformly distributed in the cell. |
Supporting Information | Parameter correlations derived from 100 fits started With uniformly distributed parameters Within the parameter boundaries (axis ranges) for Model-1 (red) and Model-2 (blue). |
Supporting Information | Distribution of parameter and objective values derived from 100 fits started With uniformly distributed parameters Within the parameter boundaries for |
Discussion | In our default implementation, we assumed a uniform distribution for possible dosages within any given ploidy. |
Simulations | We employed the same uniform distribution to simulate allele dosages. |
Summary of the Ploidy Estimation Model | We then assume a uniform distribution for all possible heterozygous proportions, as done by others in a notes the dosage of the first allele, with g = 1, - - -, M—l. |
Summary of the Ploidy Estimation Model | both possibilities are uniformly distributed . |
Discussion | Specificically the circular correlation coefficient can only be used for uniform distributions (i.e. |
Discussion | However, the more general vector formulation of the circular correlation coefficient, while not constrained to a uniform distribution , is very complex, and thus cannot be easily characterized the way we have done for the COOP. |
Synthetic Data | 2) was generated using a random number generator (rand) that provides a uniform distribution of at least 106 random values in MATLAB. |