A comprehensive model of WNT/,B-catenin signaling | With regard to the continuous autocrine signal, our findings are in line with a previous study of our group, where we used a simplified computational model to provide evidence for the self-induced autocrine/paracrine WNT signaling in hNPCs [44]. |
Abstract | In addition we provide the first stochastic computational model of WNT/B-catenin signaling that combines membrane-related and intracellular processes, including lipid rafts/receptor dynamics as well as WNT- and ROS-dependent B-catenin activation. |
Author Summary | The stochastic multilevel computational model we derive from our experimental measurements adds to the family of existing WNT models, addressing major biochemical and spatial aspects of WNT/beta-catenin signaling that have not been considered in existing models so far. |
Endogenous ROS signaling as potential trigger for ,B-catenin signaling | To summarize, based on our computational model , we demonstrated, that DVL may either act as amplifier or as direct inducer of canonical WNT signaling. |
Nuclear ,B-catenin dynamics during early differentiation in human neural progenitor cells | To explore the signaling mechanisms of both, the continuous activation pattern in untreated and in particular the early immediate response in raft-deficient cells, we perform a number of simulation studies based on a validated computational model of WNT signaling we will present in the following. |
Results/Discussion | Computational modeling is increasingly applied to derive or test hypotheses, that in most cases arise from experimental data. |
transcription signal. | To evaluate, whether an interplay between ROS-induced and lipid raft dependent WNT/fi-catenin signaling can explain our experimental results we apply computational modeling . |
Abstract | Using computational models we show that neither channel noise nor a realistic cell morphology are responsible for the rate dependent shift in the phase response curve. |
Author Summary | Furthermore, we address potential explanations for the observed transition using computational modeling . |
Computational modeling | Computational modeling |
Computational modeling | Active conductances are thought to modulate the shape of the PRC, and therefore computational modeling [7, 47, 48] could be a powerful tool to dissect the ionic bases of the PRC. |
Supporting Information | PRCs computed for a highly detailed computational model of a Purkinje cell with synaptic activation in the dendritic tree. |
Supporting Information | The computational model . |
Supporting Information | (a) Diagram of the computational model colored by section name. |
Supporting Information | (c) The computational model parameters. |