Index of papers in PLOS Comp. Biol. that mention
  • biological systems
Tamar Friedlander, Avraham E. Mayo, Tsvi Tlusty, Uri Alon
Abstract
Bow-tie or hourglass structure is a common architectural feature found in many biological systems .
Abstract
This offers a mechanism to understand a common architectural principle of biological systems , and a way to quantitate the effective rank of the goals under which they evolved.
Author Summary
Many biological systems show bow-tie (also called hourglass) architecture.
Author Summary
This offers a mechanism to understand a common architectural principle of biological systems , and a way to quan-titate the rank of the goals under Which they evolved.
E E
Since complete absence of noise is a nonrealistic scenario in biological systems , we conclude that sum-mutations cannot account for bow-tie evolution.
biological systems is mentioned in 5 sentences in this paper.
Topics mentioned in this paper:
Paul Egan, Jeffrey Moore, Christian Schunn, Jonathan Cagan, Philip LeDuc
Abstract
The finding of such laws provides insight for how patterns emerge in stochastic mechanochemical systems, while also informing understanding and engineering of complex biological systems .
Author Summary
Complex biological systems consist of many parts that interact in non-obvious ways.
Discussion
The method for finding a unified scaling expression using an agent-based simulation approach is extendible to describing emergent laws in a variety of similar complex biological systems .
Introduction
The unified expression would greatly aid in predicting mechanisms of complex in vivo biological systems while enabling rapid prototyping of myosin-based technologies [12].
biological systems is mentioned in 4 sentences in this paper.
Topics mentioned in this paper:
Alistair M. Senior, Michael A. Charleston, Mathieu Lihoreau, Jerome Buhl, David Raubenheimer, Stephen J. Simpson
Future Directions
Our evolutionary model could be further expanded to give a more detailed representation of specific biological systems .
Future Directions
Such assumptions seem justifiable on the basis of the biological systems that we are interested in.
Model Outcomes and Biological Implications
Several biological systems are well suited to empirical exploration of this idea.
Protein
The general selection mechanism that we implement is representative of the biological systems on which our models are based; i.e.
biological systems is mentioned in 4 sentences in this paper.
Topics mentioned in this paper:
Daifeng Wang, Koon-Kiu Yan, Cristina Sisu, Chao Cheng, Joel Rozowsky, William Meyerson, Mark B. Gerstein
Applications
We studied Loregic’s ability to characterize gene regulation in both small and complex biological systems .
Applications
Yeast (S. Cerevisiae) constitutes a small but well-studied biological system .
Applications
By contrast, human cancers are much more complex biological systems and we use them to illustrate how Loregic can accommodate many different types of regulators (e.g.
biological systems is mentioned in 3 sentences in this paper.
Topics mentioned in this paper:
Cheng Lv, Xiaoguang Li, Fangting Li, Tiejun Li
Abstract
In our opinion, this meticulous structure of the energy landscape for our simplified model is of general interest to other cell cycle dynamics, and the proposed methods can be applied to study similar biological systems .
Finite volume effect
This is a reasonable assumption for most biological systems .
Introduction
However, it is still difficult to quantify the robustness and adaptivity of cellular networks, even for a small cellular network perturbed by intrinsic random fluctuations, due to the massive cross regulations and nonlinear nature of such biological systems .
biological systems is mentioned in 3 sentences in this paper.
Topics mentioned in this paper: