Index of papers in PLOS Comp. Biol. that mention
  • Gene Ontology
Seen in text as:
  • Gene Ontology (7)
  • gene ontology (3)
Seen in 12 sentences in 3 papers.
1. Neuroblastoma Tyrosine Kinase Signaling Networks Involve FYN and LYN in Endosomes and Lipid Rafts
Juan Palacios-Moreno, Lauren Foltz, Ailan Guo, Matthew P. Stokes, Emily D. Kuehn, Lynn George, Michael Comb, Mark L. Grimes
In April 2015.
Conclusion
This study, and other large-scale gene expression or proteomic studies that include network and pathway analysis [82,83,114] and gene ontology [115], will help determine likely control points for cell growth, migration, and differentiation in individual tumors.
Data Analysis and Clustering
Gene Ontology (G0) was determined as described [34].
Embedding and Cluster Analysis
Clusters were evaluated internally, based on the primary data, and externally, using PPI and gene ontology (GO) databases (SS Fig).
Introduction
By combining pattern recognition techniques with gene ontology (GO) and protein-protein interaction (PPI) data, we learned that clusters that contain interacting proteins are likely to indicate functional signaling pathways [34—40].
Supporting Information
Gene ontology summaries of clusters.
Gene Ontology is mentioned in 5 sentences in this paper.
Topics mentioned in this paper:
2. Mining Host-Pathogen Protein Interactions to Characterize Burkholderia mallei Infectivity Mechanisms
Vesna Memišević, Nela Zavaljevski, Seesandra V. Rajagopala, Keehwan Kwon, Rembert Pieper, David DeShazer, Jaques Reifman, Anders Wallqvist
In March 2015.
Characteristics of host proteins interacting with known B. mal/ei virulence factors
First, we applied functional enrichment analyses based on Gene Ontology (GO) annotation data [23] to assess the characteristics of the human proteins targeted by the nine virulence factors.
Supporting Information
A list of interaction modules statistically significantly enriched in Gene Ontology (GO) biological processes for human proteins interacting with known B. mallei virulence 82 Table.
Supporting Information
Gene Ontology (GO) terms and Kyoto Encyclopedia of Genes and Genomes (KEGG) pathways statistically significantly enriched in human proteins interacting with known and/ or putative B. mallei Virulence factors.
Supporting Information
Subnetworks statistically significantly enriched in Gene Ontology (GO) biological processes for human proteins interacting with known and/ or putative B. mallei Viru-SS Table.
Gene Ontology is mentioned in 4 sentences in this paper.
Topics mentioned in this paper:
3. Transcriptional Dynamics Reveal Critical Roles for Non-coding RNAs in the Immediate-Early Response
Stuart Aitken, Shigeyuki Magi, Ahmad M. N. Alhendi, Masayoshi Itoh, Hideya Kawaji, Timo Lassmann, Carsten O. Daub, Erik Arner, Piero Carninci, Alistair R. R. Forrest, Yoshihide Hayashizaki, Levon M. Khachigian, Mariko Okada-Hatakeyama, Colin A. Semple , the FANTOM Consortium
In April 2015.
Kinetics and chromatin features underlying IEG induction
(2007) [10], we constructed a set of 444 genes assigned with the Gene Ontology annotation for nucleotide binding GO:0000166 (IEA assignments were excluded).
The early peak signature is enriched for lEGs and signalling pathways
Gene ontology terms associated with early peak clusters that were significantly over-repre-sented in HRG treated MCF7 cells are listed in 81 Table, see also S6 Fig (analysis performed with GOrilla [22] and REVIGO [23]).
peak category.
Gene Ontology process term enrichment in MCF7-HRG cells.
Gene Ontology is mentioned in 3 sentences in this paper.
Topics mentioned in this paper:
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