Index of papers in PLOS Comp. Biol. that mention
  • HeLa cells
Tae J. Lee, Jeffrey Wong, Sena Bae, Anna Jisu Lee, Allison Lopatkin, Fan Yuan, Lingchong You
Immunostaining of surface-bound bacteria
On the following day, HeLa cells were then infected with invasin-expressing E. coli at an MOI of 200 by plate rotation at an rpm of 50, in a 37°C, 5% C02 humidified incubator for 90min.
Immunostaining of surface-bound bacteria
After infection, HeLa cell were washed twice with phosphoate buffered saline (PBS) and fixed with 3% formaldehyde/ 0.025% glutaraldehyde at room temperature for 10 min.
Immunostaining of surface-bound bacteria
HeLa cells were then blocked with 5% BSA in PBS for 30 min at room temperature and stained with anti-LPS E. coli (Abcam).
Supporting Information
HeLa cells were co-incubated with E. coli
Supporting Information
HeLa cells incubated With either control antibody (actin) or antibody against Bl-integrin along With fluorescent secondary antibody (Alexa647).
Supporting Information
HeLa cells , infected with E. coli expressing invasin and GFP at an MOI of 200 for 90 minutes, were washed with PBS twice, fixed with paraformaldehyde, and immunostained with an anti-LPS antibody to identify bacterial cell wall (red color) and Hoechst to identify DNA (blue color).
The probability of invasin-mediated uptake is invariant
After co-culture of increasing amounts of GFP-expressing E. coli harboring a plasmid permitting arabinose-inducible control of invasin (pBACr-Aralnv) with HeLa cells , flow cytometry was conducted to obtain data shown in Fig 3A.
The probability of invasin-mediated uptake is invariant
In the absence of induction, bacteria carrying pBACr-AraIm/ cannot infect host cells, which was reported previously [27] and observed by us by co-incubating HeLa cells with uninduced bacteria (S6A—S6C Fig).
Variability in invasin-mediated bacterial uptake
In each experiment, the engineered bacteria were co-cultured with HeLa cells for 90 minutes in well-mixed conditions to mitigate the effects of heterogeneity in the bacterial population.
Variability in invasin-mediated bacterial uptake
Consistent with observations reported in the literature [18,22], fluorescence microscopy confirmed drastic cell-cell variability in bacterial uptake by HeLa cells (Fig 1A).
Variability in invasin-mediated bacterial uptake
However, immunolabeling experiments revealed a relatively narrow, unimodal distribution of Bl-integrins across HeLa cells (SID Fig).
HeLa cells is mentioned in 16 sentences in this paper.
Topics mentioned in this paper:
Yu-Chen Lo, Silvia Senese, Chien-Ming Li, Qiyang Hu, Yong Huang, Robert Damoiseaux, Jorge Z. Torres
Immunofluorescence microscopy
HeLa cells were treated with indicated compounds at their respective EC90 for 20 hours, fixed with 4% parafor-maldehyde, permeabilized with 0.2% Triton X- 100/ PBS and co-stained for DNA (0.5 ug/ ml Hoechst 33342) and tubulin (rat anti-tubulin primary antibodies and anti-rat Cy3 secondary antibodies).
Relating network connectivity to consensus drug mechanism
Consistently, a similar SAR trend was observed by evaluating each compound’s potency (EC50) in HeLa cells with regards to their ability to arrest cells in G2/M-phase and induce cell death.
Relating network connectivity to consensus drug mechanism
To test if tubulin was the primary target, we treated HeLa cells with compounds 6—12 and analyzed their effects by IF microscopy.
Relating network connectivity to consensus drug mechanism
As expected, compounds 6—12 induced a microtubule depolymerization phenotype in HeLa cells (Figs 5G and 812).
Supporting Information
(AF) Immunofluorescence of HeLa cells treated with control DMSO or indicated compounds (1—5) for 20 hours.
Supporting Information
(A) For cell Viability assays, HeLa cells were treated with increasing concentrations (20-point titration 0—-100 uM) of indicated compounds (6—12) for 20 hours and the percentage of cells arrested in G2/M was quantified.
Supporting Information
Immunofluorescence microscopy of HeLa cells treated with control DMSO, Taxol, col-chicine, or the indicated compounds (6—12) for 20 hours.
HeLa cells is mentioned in 7 sentences in this paper.
Topics mentioned in this paper:
Stuart Aitken, Shigeyuki Magi, Ahmad M. N. Alhendi, Masayoshi Itoh, Hideya Kawaji, Timo Lassmann, Carsten O. Daub, Erik Arner, Piero Carninci, Alistair R. R. Forrest, Yoshihide Hayashizaki, Levon M. Khachigian, Mariko Okada-Hatakeyama, Colin A. Semple , the FANTOM Consortium
Introduction
The attenuation of the initial response of delayed IEGs to EGF was also shown to depend on negative feedback through de novo transcription in HeLa cells [10], but it is unknown whether negative feedback plays roles in other cell types or under other stimuli.
Kinetics and chromatin features underlying IEG induction
This set of delayed early genes has been shown to be activated in waves following FOS, JUN and EGRl expression in HeLa cells [10].
Kinetics and chromatin features underlying IEG induction
This is consistent with reports that NAB2 represses EGR1 and thereby attenuates the immediate-early response in HeLa cells stimulated with EGF [10].
HeLa cells is mentioned in 3 sentences in this paper.
Topics mentioned in this paper: