Index of papers in PLOS Comp. Biol. that mention
  • simulation study
Juliane Siebourg-Polster, Daria Mudrak, Mario Emmenlauer, Pauli Rämö, Christoph Dehio, Urs Greber, Holger Fröhlich, Niko Beerenwinkel
Abstract
In an extensive simulation study , we show that NEMix improves learning of pathway structures over classical NEMs significantly in the presence of hidden pathway stimulation.
Application to pathogen infection experiments
Like in the simulation study above, we compared the NEMix model to the NEM and the sc-NEM approach.
Application to pathogen infection experiments
Like for the simulation study , we derived the cell population effects for the NEM from Wilcoxon tests, comparing the knockdown experiment to the control.
Application to pathogen infection experiments
Like in the simulation study , p0 was initialized by drawing randomly from a uniform distribution.
Simulation study
Simulation study
Simulation study
To test our model, we performed a large simulation study .
Supporting Information
To assess the edge recovery performance for larger NEMiX models, we ran a reduced simulation study .
simulation study is mentioned in 7 sentences in this paper.
Topics mentioned in this paper:
Naoki Hiratani, Tomoki Fukai
Author Summary
To begin to answer these questions, we conducted analytical and simulation studies examining the propagation of spike correlation in feedback neural circuits.
Introduction
Several simulation studies further revealed that neurons acquire receptive field [17—19] or spike patterns [20] through STDP by introducing lateral inhibition; yet, those studies were limited to simplified cases for which a large population of independent neurons was suggested to be sufficient [5,21,22].
Model
Previous simulation studies showed lateral inhibition has critical effects on excitatory STDP learning [17—19]; however, it has not yet been well studied how a secondary correlation generated through the lateral circuits influences STDP at feedforward connections, and it is still largely unknown how lateral inhibition functions with various stimuli in different neural circuits.
dev Ma Ma d: g ZLanfv’ VEGA? Z qquv’p — NaWZMa WYZL“ Wig", vi Z qquV/p v,=1 p v’=1 P
Therefore, both analytical and simulation studies indicate that lateral inhibition should be strong, fast and sharp to detect higher correlation structure.
simulation study is mentioned in 4 sentences in this paper.
Topics mentioned in this paper:
Dimitri Yatsenko, Krešimir Josić, Alexander S. Ecker, Emmanouil Froudarakis, R. James Cotton, Andreas S. Tolias
Cross-validation
This approach was used to compute the covariance matrix estimates and their true loss in the simulation study (Fig.
Simulation
The covariance matrices were then subjected to the respective regularizations to produce the ground truth matrices for the simulation studies (Fig.
an
This simulation study demonstrated that cross-validated evaluation of regularized estimators of the covariance matrices of population activity can discriminate between structures of dependencies in the population.
simulation study is mentioned in 3 sentences in this paper.
Fiete Haack, Heiko Lemcke, Roland Ewald, Tareck Rharass, Adelinde M. Uhrmacher
Abstract
Our simulation studies further illustrate the elaborate spatio-temporal regulation of DVL, which, depending on its concentration and localization, may either act as direct inducer of the transient ROS/B-catenin signal or as amplifier during continuous auto-/ parcrine WNT/B-catenin signaling.
Endogenous ROS signaling as potential trigger for ,B-catenin signaling
Our simulation studies confirm that the presented model of combined redox and raft-dependent wnt signaling provides a sustained eXplanation to our experimental data.
Nuclear ,B-catenin dynamics during early differentiation in human neural progenitor cells
To explore the signaling mechanisms of both, the continuous activation pattern in untreated and in particular the early immediate response in raft-deficient cells, we perform a number of simulation studies based on a validated computational model of WNT signaling we will present in the following.
simulation study is mentioned in 3 sentences in this paper.
Topics mentioned in this paper:
Thomas Obadia, Romain Silhol, Lulla Opatowski, Laura Temime, Judith Legrand, Anne C. M. Thiébaut, Jean-Louis Herrmann, Éric Fleury, Didier Guillemot, Pierre-Yves Boëlle , on behalf of the I-Bird Study Group
A simulation study of tests for the correlation of CPI-supported paths and carriage
A simulation study of tests for the correlation of CPI-supported paths and carriage
Author Summary
A simulation study was first conducted to choose a test statistic for the association of CPI paths with transmission, showing that CPI path length from transmitter to incident case was the most powerful.
Statistical analysis
To first study the characteristics of the three approaches and choose the most powerful, we used a simulation study based on a Susceptible—Colonized—Susceptible transmission model on the CPI network.
simulation study is mentioned in 3 sentences in this paper.
Topics mentioned in this paper: