Index of papers in April 2015 that mention

**simulation results**

Discussion | This simulated result was confirmed with empirically-reconstructed human brain networks derived from high-density EEG recordings, demonstrating again that the anterior-to-posterior directionality occurs because of the posterior-hub structure. |

Identification of mathematical relationships among node degree, amplitude of local oscillations and directionality of interactions | We also varied the time delay parameter across a broad range (2~50ms), but this did not yield a qualitative difference in the simulation results as long as the delay was less than a quarter cycle (< 25 ms) of the given natural frequency (in this case, one cycle is about 100 ms since the frequency is around 10Hz). |

Identification of mathematical relationships among node degree, amplitude of local oscillations and directionality of interactions | Fig 3 shows the simulation results in random and scale-free networks, which represent two extreme cases of inhomogeneous degree networks. |

Identification of mathematical relationships among node degree, amplitude of local oscillations and directionality of interactions | To explain these simulation results , we utilized Ko et al.’s mean-field technique approach to derive the relationships for the coupled Stuart-Landau oscillators with inhomogeneous coupling strength, which in turn can be applied to inhomogeneous degree networks by interpreting inhomogeneous coupling strength as inhomogeneous degree for each oscillator [43]. |

Supporting Information | The simulation results suggest that the phase-lead/lag relation, causality, and information flow transfer are possibly all correlated with each other. |

Synopsis of analytical derivation | The simulation results confirmed that the central relationship of degree, node dynamics and directionality (i.e., higher degree nodes have larger amplitudes and phase lag behind lower degree nodes) still holds firmly. |

simulation results is mentioned in 7 sentences in this paper.

Topics mentioned in this paper:

Methodology Validation | We then produced a random population With these a priori probabilities, and compared the expected frequency of a haplotype unobserved in a sample (Z(R)), the expected number of unique haplotypes in the population (U(R)) and the fraction of the population covered by these haplotypes to the simulations results . |

Supporting Information | Ratio of analytical estimated U(R) values divided by simulation results for different values of sample size and a (Inset: Analytical estimation (gray solid line) and simulation values (black circles) of U(R) (black circles) for a = 1.5). |

Supporting Information | Ratio of analytical estimated fraction of covered population values divided by simulation results for different values of sample size and a (Inset: Analytical estimation (gray solid line) and simulation values (black circles) of fraction of covered population for a = 1 .5. |

Supporting Information | Ratio of analytical estimated values of the probability that there exists at least one unobserved haplotype divided by simulations results for different values of sample size and a (Inset: Analytical estimation (gray solid line) and simulation values (black circles) of the probability that there exists at least one unobserved haplotype for a = 1.5. |

simulation results is mentioned in 4 sentences in this paper.

Topics mentioned in this paper:

- haplotypes (127)
- sample size (24)
- power law (13)

Analytical Models of Distribution of Affinity, Equilibrium Constants, Specificity and Kinetics | Therefore, these give the correspondences of the analytical results for distribution of the variables in different temperature ranges With the simulation results for distribution of the variables in different variable ranges. |

Microscopic Atomic Binding Model and Simulation Results | Microscopic Atomic Binding Model and Simulation Results |

Results and Discussion | We will first present the analytical results and then the simulation results . |

Supporting Information | The fitting procedure for the simulation results . |

simulation results is mentioned in 4 sentences in this paper.

Topics mentioned in this paper:

- free energy (57)
- ligands (39)
- power law (17)

Discussion | Simulation results also indicated that ConPADE works well for contigs of small size, on the order of a few thousand nucleotides in length. |

Simulations | Collectively, these simulation results show that high ploidy levels can be reliably estimated only with high sequencing coverage, even for long contigs. |

Supporting Information | Coverage simulation results . |

Supporting Information | Coverage simulation results . |

simulation results is mentioned in 4 sentences in this paper.

Topics mentioned in this paper:

- SNP (23)
- de novo (9)
- estimation accuracy (8)

Study 2: Decision speed and accuracy from embodied choice | Simulation results for this model of ‘action initiation and changes of mind’ |

Study 2: Decision speed and accuracy from embodied choice | Simulation results for this model of ‘action preparation’ (Fig. |

Study 2: Decision speed and accuracy from embodied choice | Simulation results for this model of action preparation and commitment (Fig. |

simulation results is mentioned in 3 sentences in this paper.

Topics mentioned in this paper:

- decision making (40)
- Experimental Data (8)
- decision-making (6)

Processive Lifetime Simulations | The relationship among myosin isoform values being predictive of the energy required for processivity may be investigated through viewing simulation results according to the energy consumed by a system on average for a given processivity. |

Unified Scaling at the Systems Level for All Isoforms | When determining E* from Fig 6B simulation results are representative of ensembles with pro-cessive lifetimes of approximately 500ms. |

Unified Scaling at the Systems Level for All Isoforms | When simulation results from Fig 6A are reconsidered with E*, there is strong agreement among all isoform types adhering to one master curve (Fig 7). |

simulation results is mentioned in 3 sentences in this paper.

Topics mentioned in this paper:

- binding site (6)
- biological systems (4)
- simulation results (3)

A power-law summarizes uptake dependence on host receptors | Simulation results show that these behaviors arise from a threshold relationship between uptake and host receptor number. |

Supporting Information | Lines extended from the power-law simulation results no longer remain parallel away from biologically relevant receptor concentrations. |

The probability of invasin-mediated uptake is invariant | When GFP values were scaled with their respective MOI for the fraction of infected host cells, the curves collapsed into a single linear line that has high correlation (Fig 3D), similar to our previous simulation results (Fig 2C). |

simulation results is mentioned in 3 sentences in this paper.

Topics mentioned in this paper:

- power-law (42)
- E. coli (20)
- HeLa cells (16)